Histo Analysis

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Inheritance graph

Defined in file : brainvisa/toolboxes/morphologist/types/anatomy.py

Used in the following processes

Ana Brain Mask from T1 MRI
Ana Compute Hemi Grey White Classification
Ana Get Opened Whole Brain Surface
Ana Get Spherical Cortical Surface
Ana Split Brain from Brain Mask
Anatomist Show Bias Correction
Brain Detection
Brain Mask Segmentation
BrainVISA Show Histo analysis
Compute Brain Mask
Compute Cortex image
Correction Brain Mask from T1 MRI
Correction Split Brain from Brain Mask
Cortical Fold Arg (3.0)
Create histo analysis manually
Edit histo analysis
Edit Histo analysis
Grey White Classification 2012
Grey white Interface
Grey White Surface 2012
Head Mesh
Hemisphere Grey White Classification
Hemisphere Grey White Topological Correction
Histogram analysis
Histogram analysis
Histogram Analysis
Import FreeSurfer grey/white segmentation to Morphologist
Morphologist 2013
Morphologist 2015
Normalize T1 MRI
Show histo analysis
Simplified Morphologist 2015
Split Brain Mask
Split Brain Mask
Validation Pipeline
Validation_2 Nobias Histo analysis
Vip Get Brain
Vip Histogram analysis
Vip Split Brain

Associated formats

Histo Analysis

Associated ontology rules

  • flat :
    • ./nobias_<filename>
  • brainvisa-3.2.0 :
    • {center}/{subject}/t1mri/{acquisition}/{analysis}/nobias_<subject>
  • brainvisa-3.0 :
    • {protocol}/{subject}/anatomy/nobias_<subject>
    {protocol}/{subject}/anatomy/nobias_<subject>_*
    {protocol}/{subject}/anatomy/{acquisition}/nobias_<subject>
    {protocol}/{subject}/anatomy/{acquisition}/nobias_<subject>_*
  • brainvisa-3.1.0 :
    • {protocol}/{subject}/t1mri/{acquisition}/{analysis}/nobias_<subject>

    Key attributes

  • brainvisa-3.2.0 :
    • rescan ,  acquisition_date ,  time_point ,  time_duration ,  center ,  subject ,  acquisition ,  analysis ,  mapped ,  contrast
  • brainvisa-3.0 :
    • protocol ,  subject ,  filename_variable ,  acquisition
  • brainvisa-3.1.0 :
    • protocol ,  subject ,  acquisition ,  analysis